scanpy.Preset

class scanpy.Preset(*values)

Bases: StrEnum

Presets for scanpy.settings.preset.

See properties below for details.

Attributes

highly_variable_genes	Flavor for highly_variable_genes().
filter_cells	Cutoffs for filter_cells().
filter_genes	Cutoffs for filter_genes().
ScanpyV1	Scanpy 1.*’s default settings.
SeuratV5	Try to match Seurat 5.* as closely as possible.

Methods

override(preset)

Temporarily override scanpy.settings.preset.